File:A replica exchange molecular dynamics simulation of the folding of.webm
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A_replica_exchange_molecular_dynamics_simulation_of_the_folding_of.webm (file size: 47.25 MB, MIME type: video/webm)
Summary
| Description |
English: A replica exchange molecular dynamics simulation of a 15 amino acid β-hairpin protein (GB1p). The simulation was performed using NAMD with the PACE coarse-grain model. The simulation contains 12 replicas with temperatures ranging from 300 K to 600 K.
The simulation shows the first 12.5 ns of the simulation. The protein is only partially folded at the end of the simulation. A longer simulation would be needed to reach convergence. The simulation was rendered using a tube representation with VMD 1.9.2. The tube is colored according to its instantaneous secondary structure defined by STRIDE. |
| Date | |
| Source | Own work |
| Author | Christopher Rowley |
Licensing
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| Date/Time | Dimensions | User | Comment | |
|---|---|---|---|---|
| current | 19:29, 22 November 2014 | (47.25 MB) | wikimediacommons>Cnrowley | User created page with UploadWizard |
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